Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3923172..3923443 | Replicon | chromosome |
| Accession | NZ_LR778148 | ||
| Organism | Escherichia coli isolate SC475 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3923210..3923313 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3923172..3923443 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H1C74_RS18780 | 3920328..3921768 | + | 1441 | Protein_3660 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| H1C74_RS18785 | 3921886..3922122 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H1C74_RS18790 | 3922227..3922418 | + | 192 | WP_001296140.1 | YebW family protein | - |
| H1C74_RS18795 | 3922419..3923075 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 3923172..3923443 | + | 272 | - | - | Antitoxin |
| - | 3923210..3923313 | - | 104 | - | - | Toxin |
| H1C74_RS18800 | 3923471..3923812 | - | 342 | WP_000976472.1 | YebY family protein | - |
| H1C74_RS18805 | 3923825..3924697 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| H1C74_RS18810 | 3924701..3925075 | - | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| H1C74_RS18815 | 3925214..3925444 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H1C74_RS18820 | 3925546..3926202 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| H1C74_RS18825 | 3926226..3926888 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T289221 NZ_LR778148:c3923313-3923210 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT289221 NZ_LR778148:3923172-3923443 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
