Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1461021..1461292 | Replicon | chromosome |
| Accession | NZ_LR778141 | ||
| Organism | Escherichia coli isolate SC407 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1461059..1461162 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1461021..1461292 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H1C92_RS07310 | 1458178..1459617 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| H1C92_RS07315 | 1459735..1459971 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| H1C92_RS07320 | 1460076..1460267 | + | 192 | WP_001296140.1 | YebW family protein | - |
| H1C92_RS07325 | 1460268..1460924 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1461021..1461292 | + | 272 | - | - | Antitoxin |
| - | 1461059..1461162 | - | 104 | - | - | Toxin |
| H1C92_RS07330 | 1461320..1461661 | - | 342 | WP_000976492.1 | YebY family protein | - |
| H1C92_RS07335 | 1461674..1462546 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| H1C92_RS07340 | 1462550..1462924 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| H1C92_RS07345 | 1463063..1463293 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H1C92_RS07350 | 1463395..1464051 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| H1C92_RS07355 | 1464075..1464737 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T289091 NZ_LR778141:c1461162-1461059 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT289091 NZ_LR778141:1461021-1461292 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
