Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-YafN |
| Location | 199451..199986 | Replicon | plasmid paAPEC5202 |
| Accession | NZ_LR740759 | ||
| Organism | Escherichia coli strain BEN5202 isolate laying hen 51 weeks old | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | V0VJJ7 |
| Locus tag | APEC5202_RS25900 | Protein ID | WP_000222760.1 |
| Coordinates | 199699..199986 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | V0VIP2 |
| Locus tag | APEC5202_RS25895 | Protein ID | WP_001132900.1 |
| Coordinates | 199451..199702 (+) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APEC5202_RS25860 | 194577..195137 | + | 561 | WP_000139315.1 | fertility inhibition protein FinO | - |
| APEC5202_RS25865 | 195273..195485 | + | 213 | WP_001299730.1 | ANR family transcriptional regulator | - |
| APEC5202_RS26820 | 195731..195805 | + | 75 | Protein_196 | endonuclease | - |
| - | 196061..196122 | - | 62 | NuclAT_1 | - | - |
| - | 196061..196122 | - | 62 | NuclAT_1 | - | - |
| - | 196061..196122 | - | 62 | NuclAT_1 | - | - |
| - | 196061..196122 | - | 62 | NuclAT_1 | - | - |
| APEC5202_RS25870 | 196109..196315 | + | 207 | WP_001351576.1 | type I toxin-antitoxin system Hok family toxin | - |
| APEC5202_RS25875 | 196599..196856 | + | 258 | WP_000083845.1 | replication regulatory protein RepA | - |
| APEC5202_RS25880 | 197088..197162 | + | 75 | WP_001442103.1 | RepA leader peptide Tap | - |
| APEC5202_RS25885 | 197155..197637 | + | 483 | WP_001273588.1 | hypothetical protein | - |
| APEC5202_RS25890 | 197630..198487 | + | 858 | WP_103529982.1 | incFII family plasmid replication initiator RepA | - |
| APEC5202_RS25895 | 199451..199702 | + | 252 | WP_001132900.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| APEC5202_RS25900 | 199699..199986 | + | 288 | WP_000222760.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| APEC5202_RS25905 | 200426..200773 | - | 348 | Protein_204 | IS1-like element IS1A family transposase | - |
| APEC5202_RS25910 | 200862..201884 | + | 1023 | WP_000255956.1 | IS21-like element IS100 family transposase | - |
| APEC5202_RS25915 | 201884..202663 | + | 780 | WP_001513481.1 | IS21-like element IS100kyp family helper ATPase IstB | - |
| APEC5202_RS25920 | 202718..203082 | - | 365 | Protein_207 | IS1 family transposase | - |
| APEC5202_RS25925 | 203182..204403 | + | 1222 | Protein_208 | ISL3 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Conjugative plasmid | tet(B) / sitABCD | vat / iroN / iroE / iroD / iroC / iroB / iucA / iucB / iucC / iucD / iutA | 1..223939 | 223939 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|