Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2092917..2093057 | Replicon | chromosome |
| Accession | NC_020211 | ||
| Organism | Serratia marcescens WW4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2092961..2093057 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2092917..2093057 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SMWW4_RS09665 | 2088186..2088581 | + | 396 | WP_015377479.1 | RidA family protein | - |
| SMWW4_RS09670 | 2088738..2089691 | + | 954 | WP_004928848.1 | prolyl aminopeptidase | - |
| SMWW4_RS24855 | 2089726..2089953 | - | 228 | Protein_1926 | DNA polymerase III subunit theta | - |
| SMWW4_RS09675 | 2090298..2090816 | + | 519 | WP_015377481.1 | non-heme ferritin | - |
| SMWW4_RS09680 | 2091108..2091524 | + | 417 | WP_049810917.1 | CopC domain-containing protein YobA | - |
| SMWW4_RS09685 | 2091527..2092408 | + | 882 | WP_015377483.1 | copper homeostasis membrane protein CopD | - |
| SMWW4_RS09690 | 2092478..2092819 | + | 342 | WP_004940890.1 | YebY family protein | - |
| - | 2092917..2093057 | - | 141 | - | - | Antitoxin |
| - | 2092961..2093057 | + | 97 | - | - | Toxin |
| SMWW4_RS09695 | 2093136..2094218 | - | 1083 | WP_041922215.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| SMWW4_RS09700 | 2094193..2094456 | - | 264 | WP_161727346.1 | excisionase | - |
| SMWW4_RS09705 | 2094544..2095611 | - | 1068 | WP_015377486.1 | recombinase RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2084900..2137125 | 52225 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T28837 NC_020211:2092961-2093057 [Serratia marcescens WW4]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT28837 NC_020211:c2093057-2092917 [Serratia marcescens WW4]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
