Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1997203..1997413 | Replicon | chromosome |
| Accession | NZ_LR134485 | ||
| Organism | Citrobacter youngae strain NCTC13709 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1997305..1997408 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1997203..1997413 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL296_RS09910 | 1993723..1994385 | - | 663 | WP_061068071.1 | exodeoxyribonuclease X | - |
| EL296_RS09915 | 1994408..1995064 | - | 657 | WP_124020969.1 | carbon-nitrogen hydrolase family protein | - |
| EL296_RS09920 | 1995171..1995401 | - | 231 | WP_005120732.1 | DNA polymerase III subunit theta | - |
| EL296_RS09925 | 1995544..1995918 | + | 375 | WP_044711069.1 | CopC domain-containing protein YobA | - |
| EL296_RS09930 | 1995922..1996794 | + | 873 | WP_124020968.1 | copper homeostasis membrane protein CopD | - |
| EL296_RS09935 | 1996811..1997149 | + | 339 | WP_124020967.1 | YebY family protein | - |
| - | 1997203..1997413 | - | 211 | - | - | Antitoxin |
| - | 1997305..1997408 | + | 104 | - | - | Toxin |
| EL296_RS09945 | 1997772..1998554 | + | 783 | WP_124020966.1 | HNH endonuclease | - |
| EL296_RS09950 | 1998800..1999441 | + | 642 | WP_061068066.1 | protein-serine/threonine phosphatase | - |
| EL296_RS09955 | 1999442..1999633 | - | 192 | WP_048211387.1 | YebW family protein | - |
| EL296_RS09960 | 1999706..2000623 | - | 918 | WP_124020965.1 | LysR family transcriptional regulator | - |
| EL296_RS09965 | 2000693..2001931 | + | 1239 | WP_124020964.1 | MFS transporter | - |
| EL296_RS09970 | 2001959..2002195 | - | 237 | WP_101742234.1 | DUF1480 family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T287934 NZ_LR134485:1997305-1997408 [Citrobacter youngae]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 211 bp
>AT287934 NZ_LR134485:c1997413-1997203 [Citrobacter youngae]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACTAAAGTGGT
CTGAAAAAAAGGGAGATTGTCACTCGCTACAATGTAAAAACCGCAAGTTCT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACTAAAGTGGT
CTGAAAAAAAGGGAGATTGTCACTCGCTACAATGTAAAAACCGCAAGTTCT
