Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 824871..825525 Replicon chromosome
Accession NZ_LR134485
Organism Citrobacter youngae strain NCTC13709

Toxin (Protein)


Gene name cptA Uniprot ID -
Locus tag EL296_RS04085 Protein ID WP_048213165.1
Coordinates 825118..825525 (+) Length 136 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID -
Locus tag EL296_RS04080 Protein ID WP_124020890.1
Coordinates 824871..825137 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EL296_RS04055 820073..821506 - 1434 WP_124020891.1 6-phospho-beta-glucosidase BglA -
EL296_RS04060 821626..822354 - 729 WP_061068520.1 MurR/RpiR family transcriptional regulator -
EL296_RS04065 822407..822718 + 312 WP_048213167.1 N(4)-acetylcytidine aminohydrolase -
EL296_RS04070 822882..823541 + 660 WP_101742747.1 hemolysin III family protein -
EL296_RS04075 823635..824615 - 981 WP_048213166.1 tRNA-modifying protein YgfZ -
EL296_RS04080 824871..825137 + 267 WP_124020890.1 FAD assembly factor SdhE Antitoxin
EL296_RS04085 825118..825525 + 408 WP_048213165.1 protein YgfX Toxin
EL296_RS04090 825616..826137 - 522 WP_048213164.1 flavodoxin FldB -
EL296_RS04095 826251..827147 + 897 WP_005123354.1 site-specific tyrosine recombinase XerD -
EL296_RS04100 827171..827884 + 714 WP_101742745.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
EL296_RS04105 827890..829623 + 1734 WP_115601508.1 single-stranded-DNA-specific exonuclease RecJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-131)

Antitoxin

Flavinator of succinate dehydrogenase

(7-77)


Sequences

Toxin        


Download         Length: 136 a.a.        Molecular weight: 15940.86 Da        Isoelectric Point: 10.9468

>T287931 WP_048213165.1 NZ_LR134485:825118-825525 [Citrobacter youngae]
VVQWQSDLRVSWRAQWLSLLIHGLVAVFILLMPWPLSYTPLWLVLLSLVVFDSVRSQRRINACQGEIRLLMDGRLRWQGQ
EWSIVCAPWMIKTGMMLRLRSDAGKRQHLWLAADSMDDAEWRDLRRLMLQQVKQG

Download         Length: 408 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10653.23 Da        Isoelectric Point: 5.6437

>AT287931 WP_124020890.1 NZ_LR134485:824871-825137 [Citrobacter youngae]
MDINNKARIHWACRRGMRELDISIMPFFEHEYDNLSNEEKRIFIRLLECDDPDLFNWLMNHGKPADEQLEQMVRLIQIRN
RERGPVAI

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References