Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2006406..2006677 | Replicon | chromosome |
| Accession | NZ_LR134222 | ||
| Organism | Escherichia coli strain NCTC11129 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2006536..2006639 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2006406..2006677 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL113_RS09840 | 2002961..2003623 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EL113_RS09845 | 2003647..2004303 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| EL113_RS09850 | 2004405..2004635 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EL113_RS09855 | 2004774..2005148 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| EL113_RS09860 | 2005152..2006024 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| EL113_RS09865 | 2006037..2006378 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2006406..2006677 | - | 272 | - | - | Antitoxin |
| - | 2006536..2006639 | + | 104 | - | - | Toxin |
| EL113_RS09870 | 2006774..2007430 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| EL113_RS09875 | 2007431..2007622 | - | 192 | WP_001296140.1 | YebW family protein | - |
| EL113_RS09880 | 2007727..2007963 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EL113_RS09885 | 2008081..2009520 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T287127 NZ_LR134222:2006536-2006639 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT287127 NZ_LR134222:c2006677-2006406 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
