Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2061380..2061651 | Replicon | chromosome |
| Accession | NZ_LR134209 | ||
| Organism | Escherichia coli strain NCTC11476 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2061510..2061613 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2061380..2061651 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL080_RS10095 | 2057935..2058597 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EL080_RS10100 | 2058621..2059277 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EL080_RS10105 | 2059379..2059609 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EL080_RS10110 | 2059748..2060122 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| EL080_RS10115 | 2060126..2060998 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| EL080_RS10120 | 2061011..2061352 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2061380..2061651 | - | 272 | - | - | Antitoxin |
| - | 2061510..2061613 | + | 104 | - | - | Toxin |
| EL080_RS10125 | 2061748..2062404 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| EL080_RS10130 | 2062405..2062596 | - | 192 | WP_001296140.1 | YebW family protein | - |
| EL080_RS10135 | 2062701..2062937 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EL080_RS10140 | 2063055..2064494 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T287035 NZ_LR134209:2061510-2061613 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT287035 NZ_LR134209:c2061651-2061380 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
