Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1792603..1792697 | Replicon | chromosome |
| Accession | NZ_LR134160 | ||
| Organism | Yersinia pseudotuberculosis strain NCTC8480 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1792603..1792696 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1792603..1792697 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL033_RS08165 | 1788193..1789143 | + | 951 | WP_011192157.1 | prolyl aminopeptidase | - |
| EL033_RS08170 | 1789203..1789433 | - | 231 | WP_002211091.1 | DNA polymerase III subunit theta | - |
| EL033_RS08175 | 1789834..1790343 | + | 510 | WP_002211092.1 | non-heme ferritin | - |
| EL033_RS08180 | 1790722..1791108 | + | 387 | WP_002211093.1 | CopC domain-containing protein YobA | - |
| EL033_RS08185 | 1791111..1791995 | + | 885 | WP_012304224.1 | copper homeostasis membrane protein CopD | - |
| EL033_RS08190 | 1792092..1792433 | + | 342 | WP_002211095.1 | YebY family protein | - |
| - | 1792603..1792696 | + | 94 | - | - | Toxin |
| - | 1792603..1792697 | - | 95 | - | - | Antitoxin |
| EL033_RS08200 | 1792956..1793282 | - | 327 | WP_002211097.1 | DUF1493 family protein | - |
| EL033_RS08205 | 1793489..1794697 | + | 1209 | WP_002209743.1 | IS256 family transposase | - |
| EL033_RS08210 | 1794641..1795057 | - | 417 | Protein_1508 | hypothetical protein | - |
| EL033_RS08215 | 1795474..1796448 | - | 975 | WP_012413651.1 | hypothetical protein | - |
| EL033_RS08220 | 1796470..1796853 | - | 384 | WP_158499507.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 1793489..1794697 | 1208 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T286895 NZ_LR134160:1792603-1792696 [Yersinia pseudotuberculosis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 95 bp
>AT286895 NZ_LR134160:c1792697-1792603 [Yersinia pseudotuberculosis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
