Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1997790..1998061 | Replicon | chromosome |
| Accession | NZ_LR134152 | ||
| Organism | Escherichia coli strain NCTC9104 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1997920..1998023 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1997790..1998061 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL040_RS09665 | 1994345..1995007 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EL040_RS09670 | 1995031..1995687 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EL040_RS09675 | 1995789..1996019 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EL040_RS09680 | 1996158..1996532 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EL040_RS09685 | 1996536..1997408 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| EL040_RS09690 | 1997421..1997762 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1997790..1998061 | - | 272 | - | - | Antitoxin |
| - | 1997920..1998023 | + | 104 | - | - | Toxin |
| EL040_RS09695 | 1998158..1998814 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| EL040_RS09700 | 1998815..1999006 | - | 192 | WP_000457842.1 | YebW family protein | - |
| EL040_RS09705 | 1999111..1999347 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EL040_RS09710 | 1999465..2000904 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T286882 NZ_LR134152:1997920-1998023 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT286882 NZ_LR134152:c1998061-1997790 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
