Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1793681..1793822 | Replicon | chromosome |
| Accession | NZ_LR133996 | ||
| Organism | Shimwellia blattae strain NCTC10965 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1793684..1793787 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1793681..1793822 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL017_RS08455 | 1788980..1790416 | + | 1437 | Protein_1619 | VENN motif pre-toxin domain-containing protein | - |
| EL017_RS19995 | 1791584..1791796 | + | 213 | WP_014715981.1 | hypothetical protein | - |
| EL017_RS08470 | 1792180..1792944 | - | 765 | WP_002445008.1 | hypothetical protein | - |
| EL017_RS08475 | 1793077..1793388 | - | 312 | WP_002445010.1 | hypothetical protein | - |
| - | 1793681..1793822 | + | 142 | - | - | Antitoxin |
| - | 1793684..1793787 | - | 104 | - | - | Toxin |
| EL017_RS08480 | 1793930..1794271 | - | 342 | WP_002445011.1 | YebY family protein | - |
| EL017_RS08485 | 1794293..1795165 | - | 873 | WP_002445013.1 | copper homeostasis membrane protein CopD | - |
| EL017_RS08490 | 1795172..1795552 | - | 381 | WP_002445015.1 | copper homeostasis periplasmic binding protein CopC | - |
| EL017_RS08495 | 1795988..1796383 | + | 396 | WP_002445017.1 | DUF937 domain-containing protein | - |
| EL017_RS08500 | 1796445..1796783 | + | 339 | WP_002445019.1 | hypothetical protein | - |
| EL017_RS08505 | 1796902..1797390 | + | 489 | WP_002445021.1 | serine protease inhibitor ecotin | - |
| EL017_RS08515 | 1797652..1798584 | - | 933 | WP_002445023.1 | ABC transporter substrate-binding protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T286550 NZ_LR133996:c1793787-1793684 [Shimwellia blattae]
GGCAGGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAGGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 142 bp
>AT286550 NZ_LR133996:1793681-1793822 [Shimwellia blattae]
GACAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTCGCCCTGCCATTTAAGAATAGATGAGCATTTCAGCTTTTCCAGT
GACAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTCGCCCTGCCATTTAAGAATAGATGAGCATTTCAGCTTTTCCAGT
