Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2774286..2774557 | Replicon | chromosome |
| Accession | NZ_LR025096 | ||
| Organism | Escherichia coli isolate EC-7215 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2774324..2774427 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2774286..2774557 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EC7215_RS13410 | 2771443..2772882 | + | 1440 | WP_024198516.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EC7215_RS13415 | 2773000..2773236 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EC7215_RS13420 | 2773341..2773532 | + | 192 | WP_000457842.1 | YebW family protein | - |
| EC7215_RS13425 | 2773533..2774189 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2774286..2774557 | + | 272 | - | - | Antitoxin |
| - | 2774324..2774427 | - | 104 | - | - | Toxin |
| EC7215_RS13430 | 2774585..2774926 | - | 342 | WP_000976492.1 | YebY family protein | - |
| EC7215_RS13435 | 2774939..2775811 | - | 873 | WP_134159187.1 | copper homeostasis membrane protein CopD | - |
| EC7215_RS13440 | 2775815..2776189 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| EC7215_RS13445 | 2776328..2776558 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EC7215_RS13450 | 2776660..2777316 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EC7215_RS13455 | 2777340..2778002 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T285856 NZ_LR025096:c2774427-2774324 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT285856 NZ_LR025096:2774286-2774557 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
