Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2025691..2025962 | Replicon | chromosome |
| Accession | NZ_CP127848 | ||
| Organism | Escherichia coli strain MB7671 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2025821..2025924 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2025691..2025962 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PJZ59_RS09695 | 2022246..2022908 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| PJZ59_RS09700 | 2022932..2023588 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PJZ59_RS09705 | 2023690..2023920 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PJZ59_RS09710 | 2024059..2024433 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| PJZ59_RS09715 | 2024437..2025309 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| PJZ59_RS09720 | 2025322..2025663 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2025691..2025962 | - | 272 | - | - | Antitoxin |
| - | 2025821..2025924 | + | 104 | - | - | Toxin |
| PJZ59_RS09725 | 2026059..2026715 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| PJZ59_RS09730 | 2026716..2026907 | - | 192 | WP_001296140.1 | YebW family protein | - |
| PJZ59_RS09735 | 2027012..2027248 | - | 237 | WP_001295499.1 | YebV family protein | - |
| PJZ59_RS09740 | 2027366..2028805 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T284283 NZ_CP127848:2025821-2025924 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT284283 NZ_CP127848:c2025962-2025691 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
