Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/RHH(antitoxin) |
| Location | 5006..5559 | Replicon | plasmid pQ501 |
| Accession | NZ_CP127256 | ||
| Organism | Escherichia coli strain Q5 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1PMX5 |
| Locus tag | QQ972_RS24070 | Protein ID | WP_000421257.1 |
| Coordinates | 5284..5559 (+) | Length | 92 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | QQ972_RS24065 | Protein ID | WP_019842653.1 |
| Coordinates | 5006..5284 (+) | Length | 93 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQ972_RS24035 (176) | 176..439 | - | 264 | Protein_1 | hypothetical protein | - |
| QQ972_RS24040 (473) | 473..1018 | + | 546 | Protein_2 | hypothetical protein | - |
| QQ972_RS24045 (1300) | 1300..3180 | + | 1881 | WP_125094062.1 | colicin Ia central receptor-binding domain-containing protein | - |
| QQ972_RS24050 (3198) | 3198..3545 | - | 348 | WP_001595228.1 | colicin E1 family microcin immunity protein | - |
| QQ972_RS24055 (3664) | 3664..4011 | + | 348 | WP_019842650.1 | DUF6404 family protein | - |
| QQ972_RS24060 (4133) | 4133..4919 | + | 787 | Protein_6 | IS21 family transposase | - |
| QQ972_RS24065 (5006) | 5006..5284 | + | 279 | WP_019842653.1 | ribbon-helix-helix domain-containing protein | Antitoxin |
| QQ972_RS24070 (5284) | 5284..5559 | + | 276 | WP_000421257.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| QQ972_RS24075 (5665) | 5665..5868 | + | 204 | Protein_9 | hypothetical protein | - |
| QQ972_RS24080 (6385) | 6385..6621 | + | 237 | WP_137498364.1 | colicin V immunity protein | - |
| QQ972_RS24085 (6625) | 6625..6750 | - | 126 | Protein_11 | efflux transporter periplasmic adaptor subunit | - |
| QQ972_RS24090 (7075) | 7075..8024 | + | 950 | Protein_12 | omptin family outer membrane protease | - |
| QQ972_RS24095 (8209) | 8209..9693 | + | 1485 | WP_285985033.1 | alpha/beta hydrolase | - |
| QQ972_RS24100 (10158) | 10158..10418 | + | 261 | WP_019842660.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Conjugative plasmid | - | iroN / iroN / iroE / iroD / iroC / iroB / papH / papC / papD / vat / vat / afaC-I | 1..137541 | 137541 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|