Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3590692..3590960 | Replicon | chromosome |
| Accession | NZ_CP127255 | ||
| Organism | Escherichia coli strain Q5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3590730..3590832 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3590692..3590960 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQ972_RS17480 | 3587848..3589287 | + | 1440 | WP_097751867.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QQ972_RS17485 | 3589406..3589642 | + | 237 | WP_001295499.1 | YebV family protein | - |
| QQ972_RS17490 | 3589747..3589938 | + | 192 | WP_001296140.1 | YebW family protein | - |
| QQ972_RS17495 | 3589939..3590595 | - | 657 | WP_097751837.1 | protein-serine/threonine phosphatase | - |
| - | 3590692..3590960 | + | 269 | - | - | Antitoxin |
| - | 3590730..3590832 | - | 103 | - | - | Toxin |
| QQ972_RS17500 | 3590990..3591331 | - | 342 | WP_000984819.1 | YebY family protein | - |
| QQ972_RS17505 | 3591344..3592216 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| QQ972_RS17510 | 3592220..3592594 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QQ972_RS17515 | 3592733..3592963 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QQ972_RS17520 | 3593065..3593721 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QQ972_RS17525 | 3593745..3594407 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T283730 NZ_CP127255:c3590832-3590730 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT283730 NZ_CP127255:3590692-3590960 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
