Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2672300..2672462 | Replicon | chromosome |
| Accession | NZ_CP125781 | ||
| Organism | Trabulsiella odontotermitis strain TBY01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2672306..2672409 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2672300..2672462 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMG90_RS12800 (QMG90_12800) | 2667429..2668352 | + | 924 | WP_283283955.1 | hypothetical protein | - |
| QMG90_RS12805 (QMG90_12805) | 2668546..2669190 | - | 645 | WP_283280011.1 | hypothetical protein | - |
| QMG90_RS12810 (QMG90_12810) | 2671005..2671601 | - | 597 | WP_283280013.1 | short chain dehydrogenase | - |
| QMG90_RS12815 (QMG90_12815) | 2671990..2672175 | + | 186 | Protein_2514 | integrase | - |
| - | 2672300..2672462 | + | 163 | - | - | Antitoxin |
| - | 2672306..2672409 | - | 104 | - | - | Toxin |
| QMG90_RS12820 (QMG90_12820) | 2672566..2672907 | - | 342 | WP_283280014.1 | YebY family protein | - |
| QMG90_RS12825 (QMG90_12825) | 2672921..2673790 | - | 870 | WP_283283956.1 | copper homeostasis membrane protein CopD | - |
| QMG90_RS12830 (QMG90_12830) | 2673794..2674168 | - | 375 | WP_283280015.1 | CopC domain-containing protein YobA | - |
| QMG90_RS12835 (QMG90_12835) | 2674305..2674535 | + | 231 | WP_283280016.1 | DNA polymerase III subunit theta | - |
| QMG90_RS12840 (QMG90_12840) | 2674693..2675352 | + | 660 | WP_283280017.1 | exodeoxyribonuclease X | - |
| QMG90_RS12845 (QMG90_12845) | 2675353..2677413 | - | 2061 | WP_283280019.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T282389 NZ_CP125781:c2672409-2672306 [Trabulsiella odontotermitis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 163 bp
>AT282389 NZ_CP125781:2672300-2672462 [Trabulsiella odontotermitis]
ACAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACCGTGCCAGGTTTTCCAGTCTGCGACTAAAGTGG
TCA
ACAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACCGTGCCAGGTTTTCCAGTCTGCGACTAAAGTGG
TCA
