Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 948003..948660 Replicon chromosome
Accession NZ_CP125781
Organism Trabulsiella odontotermitis strain TBY01

Toxin (Protein)


Gene name cptA Uniprot ID -
Locus tag QMG90_RS04690 Protein ID WP_283282799.1
Coordinates 948250..948660 (+) Length 137 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID -
Locus tag QMG90_RS04685 Protein ID WP_054177491.1
Coordinates 948003..948269 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QMG90_RS04675 (QMG90_04675) 946049..946714 + 666 WP_283282797.1 hemolysin III family protein -
QMG90_RS04680 (QMG90_04680) 946776..947756 - 981 WP_283282798.1 tRNA-modifying protein YgfZ -
QMG90_RS04685 (QMG90_04685) 948003..948269 + 267 WP_054177491.1 FAD assembly factor SdhE Antitoxin
QMG90_RS04690 (QMG90_04690) 948250..948660 + 411 WP_283282799.1 protein YgfX Toxin
QMG90_RS04695 (QMG90_04695) 948670..949191 - 522 WP_283282800.1 flavodoxin FldB -
QMG90_RS04700 (QMG90_04700) 949293..950189 + 897 WP_283282801.1 site-specific tyrosine recombinase XerD -
QMG90_RS04705 (QMG90_04705) 950212..950925 + 714 WP_283282802.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
QMG90_RS04710 (QMG90_04710) 950931..952664 + 1734 WP_283282803.1 single-stranded-DNA-specific exonuclease RecJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-132)

Antitoxin

Flavinator of succinate dehydrogenase

(8-79)


Sequences

Toxin        


Download         Length: 137 a.a.        Molecular weight: 16188.10 Da        Isoelectric Point: 12.0920

>T282387 WP_283282799.1 NZ_CP125781:948250-948660 [Trabulsiella odontotermitis]
VVLWQSDLRVSWRSQWISLLLHGVVAAVVLLMPWPLSYTPLWLLLLSLVVFDSVRSQRRINARQGEIKLLMDGRLRWQNQ
EWEILGTPWMLSIGMLLRLRRVGQRRGQHLWLAADSMDSREWRDLRRVILQRPAQE

Download         Length: 411 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10530.08 Da        Isoelectric Point: 5.6178

>AT282387 WP_054177491.1 NZ_CP125781:948003-948269 [Trabulsiella odontotermitis]
MDINNKSRIHWACRRGMRELDISIMPFFEHEYDTLTDDDKRLFIRLLECDDPDLFNWLMNHGKPDDAGLQRMVLLIQTRN
RERGPVAI

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References