Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2814482..2814625 | Replicon | chromosome |
| Accession | NZ_CP124809 | ||
| Organism | Citrobacter freundii strain CF13 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2814487..2814590 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2814482..2814625 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QLG16_RS13630 | 2811672..2813060 | + | 1389 | WP_205688464.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QLG16_RS13635 | 2813161..2813397 | + | 237 | WP_029139506.1 | YebV family protein | - |
| QLG16_RS13640 | 2813500..2813691 | + | 192 | WP_003034941.1 | YebW family protein | - |
| QLG16_RS13645 | 2813692..2814333 | - | 642 | WP_282624886.1 | protein-serine/threonine phosphatase | - |
| - | 2814482..2814625 | + | 144 | - | - | Antitoxin |
| - | 2814487..2814590 | - | 104 | - | - | Toxin |
| QLG16_RS13650 | 2814746..2815084 | - | 339 | WP_061548576.1 | YebY family protein | - |
| QLG16_RS13655 | 2815105..2815977 | - | 873 | WP_282624890.1 | copper homeostasis membrane protein CopD | - |
| QLG16_RS13660 | 2815981..2816355 | - | 375 | WP_282624892.1 | CopC domain-containing protein YobA | - |
| QLG16_RS13665 | 2816499..2816729 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| QLG16_RS13670 | 2816836..2817492 | + | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| QLG16_RS13675 | 2817516..2818178 | + | 663 | WP_003034918.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2806265..2881529 | 75264 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T281245 NZ_CP124809:c2814590-2814487 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT281245 NZ_CP124809:2814482-2814625 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
