Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2003161..2003305 | Replicon | chromosome |
| Accession | NZ_CP124804 | ||
| Organism | Klebsiella variicola strain J57 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2003197..2003299 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2003161..2003305 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QLG20_RS09765 (QLG20_09760) | 1998291..2000351 | + | 2061 | WP_124037874.1 | oligopeptidase B | - |
| QLG20_RS09770 (QLG20_09765) | 2000355..2001014 | - | 660 | WP_012541259.1 | exodeoxyribonuclease X | - |
| QLG20_RS09775 (QLG20_09770) | 2001093..2001323 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| QLG20_RS09780 (QLG20_09775) | 2001437..2001811 | + | 375 | WP_012541261.1 | CopC domain-containing protein YobA | - |
| QLG20_RS09785 (QLG20_09780) | 2001815..2002684 | + | 870 | Protein_1911 | copper homeostasis membrane protein CopD | - |
| QLG20_RS09790 (QLG20_09785) | 2002701..2003039 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 2003161..2003305 | - | 145 | - | - | Antitoxin |
| - | 2003197..2003299 | + | 103 | - | - | Toxin |
| QLG20_RS09795 (QLG20_09790) | 2003684..2003827 | - | 144 | WP_046881651.1 | Ecr family regulatory small membrane protein | - |
| QLG20_RS09800 (QLG20_09795) | 2003931..2004899 | - | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| QLG20_RS09805 (QLG20_09800) | 2005056..2005709 | + | 654 | WP_022066249.1 | protein-serine/threonine phosphatase | - |
| QLG20_RS09810 (QLG20_09805) | 2005706..2005897 | - | 192 | WP_002911395.1 | YebW family protein | - |
| QLG20_RS09815 (QLG20_09810) | 2005995..2006234 | - | 240 | WP_002911393.1 | YebV family protein | - |
| QLG20_RS09820 (QLG20_09815) | 2006350..2007783 | - | 1434 | WP_008804274.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T281227 NZ_CP124804:2003197-2003299 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT281227 NZ_CP124804:c2003305-2003161 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
