Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2850512..2850780 | Replicon | chromosome |
| Accession | NZ_CP124481 | ||
| Organism | Escherichia coli strain AVS0756 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2850550..2850652 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2850512..2850780 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QJP55_RS14015 | 2847670..2849109 | + | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QJP55_RS14020 | 2849226..2849462 | + | 237 | WP_001295499.1 | YebV family protein | - |
| QJP55_RS14025 | 2849567..2849758 | + | 192 | WP_001296140.1 | YebW family protein | - |
| QJP55_RS14030 | 2849759..2850415 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| - | 2850512..2850780 | + | 269 | - | - | Antitoxin |
| - | 2850550..2850652 | - | 103 | - | - | Toxin |
| QJP55_RS14035 | 2850810..2851151 | - | 342 | WP_000976472.1 | YebY family protein | - |
| QJP55_RS14040 | 2851164..2852036 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| QJP55_RS14045 | 2852040..2852414 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QJP55_RS14050 | 2852553..2852783 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QJP55_RS14055 | 2852885..2853541 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QJP55_RS14060 | 2853565..2854227 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T280471 NZ_CP124481:c2850652-2850550 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT280471 NZ_CP124481:2850512-2850780 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
