Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) mazEF/PRK09907-MazE
Location 1037850..1038433 Replicon chromosome
Accession NZ_CP123260
Organism Escherichia coli strain YZLc4-1

Toxin (Protein)


Gene name mazF Uniprot ID U9XFN8
Locus tag N4697_RS04995 Protein ID WP_000254745.1
Coordinates 1038098..1038433 (+) Length 112 a.a.

Antitoxin (Protein)


Gene name mazE Uniprot ID S1P3W5
Locus tag N4697_RS04990 Protein ID WP_000581937.1
Coordinates 1037850..1038098 (+) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N4697_RS04980 (1034189) 1034189..1035490 + 1302 WP_024245356.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
N4697_RS04985 (1035538) 1035538..1037772 + 2235 WP_000226815.1 GTP pyrophosphokinase -
N4697_RS04990 (1037850) 1037850..1038098 + 249 WP_000581937.1 type II toxin-antitoxin system antitoxin MazE Antitoxin
N4697_RS04995 (1038098) 1038098..1038433 + 336 WP_000254745.1 endoribonuclease MazF Toxin
N4697_RS05000 (1038504) 1038504..1039295 + 792 WP_001071648.1 nucleoside triphosphate pyrophosphohydrolase -
N4697_RS05005 (1039523) 1039523..1041160 + 1638 WP_000210878.1 CTP synthase (glutamine hydrolyzing) -
N4697_RS05010 (1041248) 1041248..1042546 + 1299 WP_000036723.1 phosphopyruvate hydratase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(10-109)

Antitoxin

SpoVT-AbrB domain

(7-51)


Sequences

Toxin        


Download         Length: 112 a.a.        Molecular weight: 12158.08 Da        Isoelectric Point: 8.4777

>T278822 WP_000254745.1 NZ_CP123260:1038098-1038433 [Escherichia coli]
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPYTTQSKGYPFEVVLSGQERDGVALADQVKS
IAWRARGATKKGTVAPEELQLIKAKINVLIG

Download         Length: 336 bp

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9355.74 Da        Isoelectric Point: 4.4665

>AT278822 WP_000581937.1 NZ_CP123260:1037850-1038098 [Escherichia coli]
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKE
VW

Download         Length: 249 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0E0XYM3

Antitoxin

Source ID Structure
PDB 1UB4
PDB 5CQX
PDB 5CQY
PDB 1MVF
PDB 2MRN
PDB 2MRU
AlphaFold DB A0A7U9LMB4

References