Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2182773..2183044 | Replicon | chromosome |
| Accession | NZ_CP122652 | ||
| Organism | Escherichia coli strain ETEC4075 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2182903..2183006 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2182773..2183044 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDW61_RS10635 | 2179328..2179990 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QDW61_RS10640 | 2180014..2180670 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QDW61_RS10645 | 2180772..2181002 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QDW61_RS10650 | 2181141..2181515 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| QDW61_RS10655 | 2181519..2182391 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| QDW61_RS10660 | 2182404..2182745 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2182773..2183044 | - | 272 | - | - | Antitoxin |
| - | 2182903..2183006 | + | 104 | - | - | Toxin |
| QDW61_RS10665 | 2183141..2183797 | + | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| QDW61_RS10670 | 2183798..2183989 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QDW61_RS10675 | 2184094..2184330 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QDW61_RS10680 | 2184448..2185887 | - | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2175463..2185893 | 10430 | |
| - | inside | Prophage | - | - | 2173600..2198884 | 25284 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T277528 NZ_CP122652:2182903-2183006 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT277528 NZ_CP122652:c2183044-2182773 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
