Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2226856..2227127 | Replicon | chromosome |
| Accession | NZ_CP122648 | ||
| Organism | Escherichia coli strain ETEC4077 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2226986..2227089 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2226856..2227127 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDY56_RS10955 | 2223411..2224073 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QDY56_RS10960 | 2224097..2224753 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QDY56_RS10965 | 2224855..2225085 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QDY56_RS10970 | 2225224..2225598 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| QDY56_RS10975 | 2225602..2226474 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| QDY56_RS10980 | 2226487..2226828 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2226856..2227127 | - | 272 | - | - | Antitoxin |
| - | 2226986..2227089 | + | 104 | - | - | Toxin |
| QDY56_RS10985 | 2227224..2227880 | + | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| QDY56_RS10990 | 2227881..2228072 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QDY56_RS10995 | 2228177..2228413 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QDY56_RS11000 | 2228531..2229970 | - | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2205013..2242967 | 37954 | |
| - | inside | Prophage | - | - | 2203073..2242967 | 39894 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T277504 NZ_CP122648:2226986-2227089 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT277504 NZ_CP122648:c2227127-2226856 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
