Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) prlF-yhaV (relBE)/YhaV-PrlF
Location 624973..625772 Replicon chromosome
Accession NZ_CP122600
Organism Escherichia coli strain ETEC6333

Toxin (Protein)


Gene name yhaV Uniprot ID A0A3A6SBL4
Locus tag QDX83_RS03025 Protein ID WP_062875446.1
Coordinates 624973..625437 (-) Length 155 a.a.

Antitoxin (Protein)


Gene name prlF Uniprot ID S1EB98
Locus tag QDX83_RS03030 Protein ID WP_001307405.1
Coordinates 625437..625772 (-) Length 112 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QDX83_RS02995 (619974) 619974..620408 - 435 WP_063086247.1 PTS galactosamine/N-acetylgalactosamine transporter subunit IIA -
QDX83_RS03000 (620426) 620426..621304 - 879 WP_001295548.1 PTS N-acetylgalactosamine transporter subunit IID -
QDX83_RS03005 (621294) 621294..622073 - 780 WP_000406214.1 PTS N-acetylgalactosamine transporter subunit IIC -
QDX83_RS03010 (622084) 622084..622557 - 474 WP_001295547.1 PTS N-acetylgalactosamine transporter subunit IIB -
QDX83_RS03015 (622580) 622580..623860 - 1281 WP_063086249.1 tagatose-bisphosphate aldolase subunit KbaZ -
QDX83_RS03020 (624109) 624109..624918 + 810 WP_000072171.1 aga operon transcriptional regulator AgaR -
QDX83_RS03025 (624973) 624973..625437 - 465 WP_062875446.1 type II toxin-antitoxin system ribonuclease toxin YhaV Toxin
QDX83_RS03030 (625437) 625437..625772 - 336 WP_001307405.1 type II toxin-antitoxin system antitoxin PrlF Antitoxin
QDX83_RS03035 (625921) 625921..627492 - 1572 WP_001273756.1 galactarate dehydratase -
QDX83_RS03040 (627867) 627867..629201 + 1335 WP_000599651.1 galactarate/glucarate/glycerate transporter GarP -
QDX83_RS03045 (629217) 629217..629992 + 776 Protein_595 2-dehydro-3-deoxyglucarate aldolase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin endonuclease, YhaV

(12-150)

Antitoxin

PrlF antitoxin

(14-110)


Sequences

Toxin        


Download         Length: 155 a.a.        Molecular weight: 17844.22 Da        Isoelectric Point: 9.4942

>T277271 WP_062875446.1 NZ_CP122600:c625437-624973 [Escherichia coli]
MDFPQRVNSWALYAHPCFQETYDALVAEVETLKGKDPENYQRKAATKLLAVVHKVIEEHITVNPSSPAFRHGKSLGSGKN
KDWSRVKFGAGRYRLFFRYSEKEKVIILGWMNDENTLRTYGKKTDAYTVFSKMLKRGHPPADWETLTRETEETD

Download         Length: 465 bp

Antitoxin


Download         Length: 112 a.a.        Molecular weight: 12358.94 Da        Isoelectric Point: 4.8616

>AT277271 WP_001307405.1 NZ_CP122600:c625772-625437 [Escherichia coli]
MPANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGQDSIHYEILPGGQVFMCRLGDEQEDHTMNAFLRFLDADIQNN
PQKTRPFNIQQGKKLVAGMDVNIDDEIGDDE

Download         Length: 336 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A3A6SBL4

Antitoxin

Source ID Structure
AlphaFold DB A0A0E0XVC7

References