Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2137961..2138232 | Replicon | chromosome |
| Accession | NZ_CP120944 | ||
| Organism | Escherichia coli O157:H7 str. EDL933 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2138091..2138194 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2137961..2138232 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P7249_RS10640 | 2134516..2135178 | - | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
| P7249_RS10645 | 2135202..2135858 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| P7249_RS10650 | 2135960..2136190 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| P7249_RS10655 | 2136329..2136703 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| P7249_RS10660 | 2136707..2137579 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| P7249_RS10665 | 2137592..2137933 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2137961..2138232 | - | 272 | - | - | Antitoxin |
| - | 2138091..2138194 | + | 104 | - | - | Toxin |
| P7249_RS10670 | 2138329..2138985 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| P7249_RS10675 | 2138986..2139177 | - | 192 | WP_001296140.1 | YebW family protein | - |
| P7249_RS10680 | 2139282..2139518 | - | 237 | WP_001295499.1 | YebV family protein | - |
| P7249_RS10685 | 2139636..2141075 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T275447 NZ_CP120944:2138091-2138194 [Escherichia coli O157:H7 str. EDL933]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT275447 NZ_CP120944:c2138232-2137961 [Escherichia coli O157:H7 str. EDL933]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
