Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2459470..2459738 | Replicon | chromosome |
| Accession | NZ_CP120567 | ||
| Organism | Escherichia coli strain A0 34/86 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2459598..2459700 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2459470..2459738 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P5707_RS11730 | 2456022..2456684 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| P5707_RS11735 | 2456708..2457364 | - | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein YobB | - |
| P5707_RS11740 | 2457467..2457697 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| P5707_RS11745 | 2457836..2458210 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| P5707_RS11750 | 2458214..2459086 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| P5707_RS11755 | 2459099..2459440 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2459470..2459738 | - | 269 | - | - | Antitoxin |
| - | 2459598..2459700 | + | 103 | - | - | Toxin |
| P5707_RS11760 | 2459835..2460491 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| P5707_RS11765 | 2460492..2460683 | - | 192 | WP_001317886.1 | YebW family protein | - |
| P5707_RS11770 | 2460788..2461024 | - | 237 | WP_001295499.1 | YebV family protein | - |
| P5707_RS11775 | 2461142..2462581 | - | 1440 | WP_012601553.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T275188 NZ_CP120567:2459598-2459700 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT275188 NZ_CP120567:c2459738-2459470 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
