Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | /RES-TIGR02293 |
| Location | 1775365..1776278 | Replicon | chromosome |
| Accession | NZ_CP119754 | ||
| Organism | Superficieibacter sp. HKU1 | ||
Toxin (Protein)
| Gene name | - | Uniprot ID | - |
| Locus tag | P0H77_RS08525 | Protein ID | WP_276164442.1 |
| Coordinates | 1775365..1775838 (-) | Length | 158 a.a. |
Antitoxin (Protein)
| Gene name | - | Uniprot ID | - |
| Locus tag | P0H77_RS08530 | Protein ID | WP_276164443.1 |
| Coordinates | 1775835..1776278 (-) | Length | 148 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P0H77_RS08500 (P0H77_08505) | 1771833..1772054 | - | 222 | WP_176920619.1 | cold shock-like protein CspD | - |
| P0H77_RS08505 (P0H77_08510) | 1772233..1772278 | + | 46 | Protein_1667 | hypothetical protein | - |
| P0H77_RS08510 (P0H77_08515) | 1772378..1772698 | + | 321 | WP_276164440.1 | ATP-dependent Clp protease adapter ClpS | - |
| P0H77_RS08515 (P0H77_08520) | 1772727..1775003 | + | 2277 | WP_276164441.1 | ATP-dependent Clp protease ATP-binding subunit ClpA | - |
| P0H77_RS08520 (P0H77_08525) | 1775187..1775358 | + | 172 | Protein_1670 | transposase | - |
| P0H77_RS08525 (P0H77_08530) | 1775365..1775838 | - | 474 | WP_276164442.1 | RES domain-containing protein | Toxin |
| P0H77_RS08530 (P0H77_08535) | 1775835..1776278 | - | 444 | WP_276164443.1 | DUF2384 domain-containing protein | Antitoxin |
| P0H77_RS08535 (P0H77_08540) | 1776569..1777069 | - | 501 | WP_276164444.1 | cysteine hydrolase family protein | - |
| P0H77_RS08540 (P0H77_08545) | 1777338..1777556 | - | 219 | WP_001040187.1 | translation initiation factor IF-1 | - |
| P0H77_RS08545 (P0H77_08550) | 1777830..1778534 | - | 705 | WP_276164467.1 | leucyl/phenylalanyl-tRNA--protein transferase | - |
| P0H77_RS08550 (P0H77_08555) | 1778577..1780298 | - | 1722 | WP_276164468.1 | cysteine/glutathione ABC transporter ATP-binding protein/permease CydC | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 158 a.a. Molecular weight: 17787.08 Da Isoelectric Point: 4.8991
>T274429 WP_276164442.1 NZ_CP119754:c1775838-1775365 [Superficieibacter sp. HKU1]
VILYRLVTQRYASEAWTGNGASQYGGRWNHKGHPAVYVSASIALASLELLVHVQKDRILNQYRLYSIEIDDDKVEYLDQK
WLPEDWQENPAPVSTMDLGTGWLEAQSALALILPSCIVPYENNAILNPLHPDFSQIKASVKEYPFTFDPRLTQNTAP
VILYRLVTQRYASEAWTGNGASQYGGRWNHKGHPAVYVSASIALASLELLVHVQKDRILNQYRLYSIEIDDDKVEYLDQK
WLPEDWQENPAPVSTMDLGTGWLEAQSALALILPSCIVPYENNAILNPLHPDFSQIKASVKEYPFTFDPRLTQNTAP
Download Length: 474 bp
Antitoxin
Download Length: 148 a.a. Molecular weight: 16326.72 Da Isoelectric Point: 10.0384
>AT274429 WP_276164443.1 NZ_CP119754:c1776278-1775835 [Superficieibacter sp. HKU1]
MKTWIPDQKPAGNALWRYAGLPANRGLKLVQLLSQGLPVSILDDIHKWTEMSKSDILRVAGINERNVSRRKSAGRALTPD
ESERIARLVRVMDTAVQYFGNKEDAWHWLQTPVRGLGNVTPVSLVSTESGALEVTDLIGRLEHGVFA
MKTWIPDQKPAGNALWRYAGLPANRGLKLVQLLSQGLPVSILDDIHKWTEMSKSDILRVAGINERNVSRRKSAGRALTPD
ESERIARLVRVMDTAVQYFGNKEDAWHWLQTPVRGLGNVTPVSLVSTESGALEVTDLIGRLEHGVFA
Download Length: 444 bp
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|