Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1991649..1991920 | Replicon | chromosome |
| Accession | NZ_CP119402 | ||
| Organism | Escherichia coli strain MRE162 substr. FRA | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1991779..1991882 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1991649..1991920 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PX810_RS09605 | 1988204..1988866 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| PX810_RS09610 | 1988890..1989546 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PX810_RS09615 | 1989648..1989878 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PX810_RS09620 | 1990017..1990391 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| PX810_RS09625 | 1990395..1991267 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| PX810_RS09630 | 1991280..1991621 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1991649..1991920 | - | 272 | - | - | Antitoxin |
| - | 1991779..1991882 | + | 104 | - | - | Toxin |
| PX810_RS09635 | 1992017..1992673 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| PX810_RS09640 | 1992674..1992865 | - | 192 | WP_001338167.1 | YebW family protein | - |
| PX810_RS09645 | 1992970..1993206 | - | 237 | WP_001338166.1 | YebV family protein | - |
| PX810_RS09650 | 1993324..1994763 | - | 1440 | WP_063091473.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T274081 NZ_CP119402:1991779-1991882 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT274081 NZ_CP119402:c1991920-1991649 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
