Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 816401..816539 | Replicon | chromosome |
| Accession | NZ_CP119319 | ||
| Organism | MAG: Kluyvera intermedia isolate MAG 4159 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 816437..816539 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 816401..816539 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P0Y47_RS03585 | 812874..813533 | - | 660 | WP_062776160.1 | exodeoxyribonuclease X | - |
| P0Y47_RS03590 | 813557..814225 | - | 669 | WP_279216513.1 | carbon-nitrogen hydrolase family protein | - |
| P0Y47_RS03595 | 814314..814544 | - | 231 | WP_153742667.1 | DNA polymerase III subunit theta | - |
| P0Y47_RS03600 | 814682..815056 | + | 375 | WP_062776289.1 | CopC domain-containing protein YobA | - |
| P0Y47_RS03605 | 815059..815928 | + | 870 | WP_279216514.1 | copper homeostasis membrane protein CopD | - |
| P0Y47_RS03610 | 815943..816281 | + | 339 | WP_126441004.1 | YebY family protein | - |
| - | 816401..816539 | - | 139 | - | - | Antitoxin |
| - | 816437..816539 | + | 103 | - | - | Toxin |
| P0Y47_RS03615 | 817015..817950 | + | 936 | WP_062776168.1 | kdo(2)-lipid IV(A) palmitoleoyltransferase | - |
| P0Y47_RS03620 | 817985..818224 | - | 240 | WP_062776169.1 | YebV family protein | - |
| P0Y47_RS03625 | 818336..819775 | - | 1440 | WP_279216515.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T273942 NZ_CP119319:816437-816539 [Kluyvera intermedia]
GCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 139 bp
>AT273942 NZ_CP119319:c816539-816401 [Kluyvera intermedia]
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTCAATCGCCTTGCTTTATAAGAATAGATGACCGTGACAGGTTTTCCAGT
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTCAATCGCCTTGCTTTATAAGAATAGATGACCGTGACAGGTTTTCCAGT
