Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1894808..1895076 | Replicon | chromosome |
| Accession | NC_017634 | ||
| Organism | Escherichia coli O83:H1 str. NRG 857C | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1894846..1894948 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1894808..1895076 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NRG857_RS09390 | 1891965..1893404 | + | 1440 | WP_024190479.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NRG857_RS09395 | 1893522..1893758 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| NRG857_RS09400 | 1893863..1894054 | + | 192 | WP_001317886.1 | YebW family protein | - |
| NRG857_RS09405 | 1894055..1894711 | - | 657 | WP_000812746.1 | protein-serine/threonine phosphatase | - |
| - | 1894808..1895076 | + | 269 | - | - | Antitoxin |
| - | 1894846..1894948 | - | 103 | - | - | Toxin |
| NRG857_RS09410 | 1895106..1895447 | - | 342 | WP_000976472.1 | YebY family protein | - |
| NRG857_RS09415 | 1895460..1896332 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| NRG857_RS09420 | 1896336..1896710 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NRG857_RS09425 | 1896849..1897079 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NRG857_RS09430 | 1897181..1897837 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| NRG857_RS09435 | 1897860..1898522 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T27336 NC_017634:c1894948-1894846 [Escherichia coli O83:H1 str. NRG 857C]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT27336 NC_017634:1894808-1895076 [Escherichia coli O83:H1 str. NRG 857C]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
