Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 2288990..2289822 | Replicon | chromosome |
| Accession | NC_017633 | ||
| Organism | Escherichia coli ETEC H10407 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | E3PBK9 |
| Locus tag | ETEC_RS11605 | Protein ID | WP_000854755.1 |
| Coordinates | 2289448..2289822 (+) | Length | 125 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | - |
| Locus tag | ETEC_RS11600 | Protein ID | WP_024185641.1 |
| Coordinates | 2288990..2289358 (+) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ETEC_RS11565 | 2286108..2286266 | + | 159 | WP_001323397.1 | DUF905 family protein | - |
| ETEC_RS11570 | 2286421..2287239 | + | 819 | WP_001234725.1 | DUF945 domain-containing protein | - |
| ETEC_RS11575 | 2287239..2287484 | + | 246 | WP_000680585.1 | hypothetical protein | - |
| ETEC_RS11580 | 2287578..2288051 | + | 474 | WP_024185640.1 | antirestriction protein | - |
| ETEC_RS11585 | 2288067..2288543 | + | 477 | WP_001186774.1 | RadC family protein | - |
| ETEC_RS11590 | 2288606..2288827 | + | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| ETEC_RS11600 | 2288990..2289358 | + | 369 | WP_024185641.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| ETEC_RS11605 | 2289448..2289822 | + | 375 | WP_000854755.1 | TA system toxin CbtA family protein | Toxin |
| ETEC_RS11610 | 2289819..2290025 | + | 207 | WP_000976829.1 | hypothetical protein | - |
| ETEC_RS30655 | 2290038..2290151 | + | 114 | WP_001161660.1 | DUF957 domain-containing protein | - |
| ETEC_RS27205 | 2290272..2291636 | - | 1365 | Protein_2201 | IS66-like element ISEc23 family transposase | - |
| ETEC_RS11635 | 2291686..2292899 | + | 1214 | WP_139371347.1 | IS3 family transposase | - |
| ETEC_RS11640 | 2292944..2293198 | - | 255 | Protein_2203 | IS66 family transposase | - |
| ETEC_RS11645 | 2293229..2293579 | - | 351 | WP_000624722.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| ETEC_RS11650 | 2293576..2294001 | - | 426 | WP_000422741.1 | IS66 family insertion sequence hypothetical protein | - |
| ETEC_RS30660 | 2294089..2294229 | + | 141 | Protein_2206 | IS3 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 125 a.a. Molecular weight: 13907.84 Da Isoelectric Point: 7.7760
>T27316 WP_000854755.1 NC_017633:2289448-2289822 [Escherichia coli ETEC H10407]
MKTLPDTHVREASSCPSPVTTWQTLLSRLLGQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKYPEAK
MKTLPDTHVREASSCPSPVTTWQTLLSRLLGQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKYPEAK
Download Length: 375 bp
>T27316 NC_017633:2289448-2289822 [Escherichia coli ETEC H10407]
ATGAAAACATTACCCGATACACACGTACGGGAGGCATCGAGCTGCCCGTCTCCCGTCACCACCTGGCAGACTCTGCTCTC
CCGACTACTGGGCCAGCATTACGGCCTTACACTGAATGACACACCGTTCGCCGATGAACGTGTGATTGAGCAGCATATTG
AAGCTGGCATTTCACTGTGTGATGCGGTGAATTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATTCTCCGGGCTCGCAGGGCGACCGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAGTATCCGGAGGCGAAATGA
ATGAAAACATTACCCGATACACACGTACGGGAGGCATCGAGCTGCCCGTCTCCCGTCACCACCTGGCAGACTCTGCTCTC
CCGACTACTGGGCCAGCATTACGGCCTTACACTGAATGACACACCGTTCGCCGATGAACGTGTGATTGAGCAGCATATTG
AAGCTGGCATTTCACTGTGTGATGCGGTGAATTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATTCTCCGGGCTCGCAGGGCGACCGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAGTATCCGGAGGCGAAATGA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13599.37 Da Isoelectric Point: 6.3173
>AT27316 WP_024185641.1 NC_017633:2288990-2289358 [Escherichia coli ETEC H10407]
VSDTLSGTTHPDDNDDHPWWRLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRYQHTVTLYAKGLTCKADTLGSGGYVYLAVYPTPETKK
VSDTLSGTTHPDDNDDHPWWRLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRYQHTVTLYAKGLTCKADTLGSGGYVYLAVYPTPETKK
Download Length: 369 bp
>AT27316 NC_017633:2288990-2289358 [Escherichia coli ETEC H10407]
GTGTCAGACACACTTTCCGGGACAACGCATCCCGATGACAATGACGACCATCCCTGGTGGAGACTACCCTGCACAGTGAC
GCCCTGTTTCGGCGCCCGTCTGGTGCAGGAGGGTAACCGCCTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGT
TCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGATATCAGCATACCGTCACGCTGTATGCAAAAGGTCTGACCTGCAAAGCTGACACTCTCGGTAGCGG
TGGTTACGTTTATCTGGCTGTTTATCCGACGCCCGAAACGAAAAAGTAA
GTGTCAGACACACTTTCCGGGACAACGCATCCCGATGACAATGACGACCATCCCTGGTGGAGACTACCCTGCACAGTGAC
GCCCTGTTTCGGCGCCCGTCTGGTGCAGGAGGGTAACCGCCTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGT
TCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGATATCAGCATACCGTCACGCTGTATGCAAAAGGTCTGACCTGCAAAGCTGACACTCTCGGTAGCGG
TGGTTACGTTTATCTGGCTGTTTATCCGACGCCCGAAACGAAAAAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|