Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2761023..2761166 | Replicon | chromosome |
| Accession | NZ_CP118536 | ||
| Organism | Salmonella enterica subsp. enterica serovar Typhi strain S7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2761025..2761127 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2761023..2761166 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PWA19_RS13810 (PWA19_13810) | 2758301..2759431 | + | 1131 | WP_000529513.1 | GGDEF domain-containing protein | - |
| PWA19_RS13815 (PWA19_13815) | 2759717..2760112 | - | 396 | Protein_2700 | DUF977 family protein | - |
| PWA19_RS13820 (PWA19_13820) | 2760125..2760235 | - | 111 | Protein_2701 | replication protein | - |
| PWA19_RS13825 (PWA19_13825) | 2760236..2760597 | + | 362 | Protein_2702 | recombinase RecT | - |
| PWA19_RS13830 (PWA19_13830) | 2760596..2760904 | + | 309 | Protein_2703 | tyrosine-type recombinase/integrase | - |
| - | 2761023..2761166 | + | 144 | - | - | Antitoxin |
| - | 2761025..2761127 | - | 103 | - | - | Toxin |
| PWA19_RS13835 (PWA19_13835) | 2761268..2761621 | - | 354 | WP_000722366.1 | YebY family protein | - |
| PWA19_RS13840 (PWA19_13840) | 2761638..2762513 | - | 876 | WP_000979693.1 | copper homeostasis membrane protein CopD | - |
| PWA19_RS13845 (PWA19_13845) | 2762514..2762888 | - | 375 | WP_001681742.1 | CopC domain-containing protein YobA | - |
| PWA19_RS13850 (PWA19_13850) | 2763026..2763256 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PWA19_RS13855 (PWA19_13855) | 2763364..2764020 | + | 657 | WP_000100250.1 | carbon-nitrogen hydrolase family protein | - |
| PWA19_RS13860 (PWA19_13860) | 2764044..2764742 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 | 2742755..2766830 | 24075 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T273154 NZ_CP118536:c2761127-2761025 [Salmonella enterica subsp. enterica serovar Typhi]
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT273154 NZ_CP118536:2761023-2761166 [Salmonella enterica subsp. enterica serovar Typhi]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
