Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2669005..2669276 | Replicon | chromosome |
| Accession | NZ_CP118014 | ||
| Organism | Escherichia coli strain B-766 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2669135..2669238 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2669005..2669276 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PT280_RS13040 | 2665560..2666222 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| PT280_RS13045 | 2666246..2666902 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PT280_RS13050 | 2667004..2667234 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PT280_RS13055 | 2667373..2667747 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| PT280_RS13060 | 2667751..2668623 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| PT280_RS13065 | 2668636..2668977 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2669005..2669276 | - | 272 | - | - | Antitoxin |
| - | 2669135..2669238 | + | 104 | - | - | Toxin |
| PT280_RS13070 | 2669373..2670029 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| PT280_RS13075 | 2670030..2670221 | - | 192 | WP_001296140.1 | YebW family protein | - |
| PT280_RS13080 | 2670326..2670562 | - | 237 | WP_001295499.1 | YebV family protein | - |
| PT280_RS13085 | 2670680..2672119 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T272679 NZ_CP118014:2669135-2669238 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT272679 NZ_CP118014:c2669276-2669005 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
