Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1789983..1790192 | Replicon | chromosome |
| Accession | NZ_CP117993 | ||
| Organism | Enterobacter hormaechei isolate 1023017620-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1790076..1790179 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1789983..1790192 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PUO93_RS09250 | 1786520..1787182 | - | 663 | WP_039270549.1 | exodeoxyribonuclease X | - |
| PUO93_RS09255 | 1787207..1787857 | - | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| PUO93_RS09260 | 1787969..1788199 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| PUO93_RS09265 | 1788337..1788708 | + | 372 | WP_023296802.1 | CopC domain-containing protein YobA | - |
| PUO93_RS09270 | 1788710..1789579 | + | 870 | WP_274292365.1 | copper homeostasis membrane protein CopD | - |
| PUO93_RS09275 | 1789596..1789934 | + | 339 | WP_003859787.1 | YebY family protein | - |
| - | 1789983..1790192 | - | 210 | - | - | Antitoxin |
| PUO93_RS09280 | 1790060..1790257 | - | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 1790076..1790179 | + | 104 | - | - | Toxin |
| PUO93_RS09285 | 1790303..1791283 | - | 981 | WP_048247182.1 | VirK/YbjX family protein | - |
| PUO93_RS09290 | 1791451..1792095 | + | 645 | WP_015570293.1 | protein-serine/threonine phosphatase | - |
| PUO93_RS09295 | 1792130..1792369 | - | 240 | WP_003859885.1 | YebV family protein | - |
| PUO93_RS09300 | 1792476..1793924 | - | 1449 | WP_202816155.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T272655 NZ_CP117993:1790076-1790179 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT272655 NZ_CP117993:c1790192-1789983 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
