Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4656853..4657124 | Replicon | chromosome |
| Accession | NZ_CP117960 | ||
| Organism | Escherichia coli strain B-3008 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4656983..4657086 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4656853..4657124 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PT288_RS22390 | 4653408..4654070 | - | 663 | WP_000944242.1 | exodeoxyribonuclease X | - |
| PT288_RS22395 | 4654094..4654750 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PT288_RS22400 | 4654852..4655082 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PT288_RS22405 | 4655221..4655595 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| PT288_RS22410 | 4655599..4656471 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| PT288_RS22415 | 4656484..4656825 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 4656853..4657124 | - | 272 | - | - | Antitoxin |
| - | 4656983..4657086 | + | 104 | - | - | Toxin |
| PT288_RS22420 | 4657221..4657877 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| PT288_RS22425 | 4657878..4658069 | - | 192 | WP_001338167.1 | YebW family protein | - |
| PT288_RS22430 | 4658174..4658410 | - | 237 | WP_001338166.1 | YebV family protein | - |
| PT288_RS22435 | 4658528..4659967 | - | 1440 | WP_001338165.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T272529 NZ_CP117960:4656983-4657086 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT272529 NZ_CP117960:c4657124-4656853 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
