Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 442050..442282 | Replicon | chromosome |
| Accession | NZ_CP117678 | ||
| Organism | Escherichia albertii strain BIA_4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 442178..442280 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 442050..442282 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PS033_RS02415 | 438980..439642 | - | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
| PS033_RS02420 | 439666..439878 | - | 213 | Protein_478 | carbon-nitrogen hydrolase family protein YobB | - |
| PS033_RS02425 | 440044..440274 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| PS033_RS02430 | 440413..440790 | + | 378 | WP_059267604.1 | CopC domain-containing protein YobA | - |
| PS033_RS02435 | 440794..441666 | + | 873 | WP_059267605.1 | copper homeostasis membrane protein CopD | - |
| PS033_RS02440 | 441679..442020 | + | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| - | 442050..442282 | - | 233 | - | - | Antitoxin |
| - | 442178..442280 | + | 103 | - | - | Toxin |
| PS033_RS02445 | 444026..444346 | + | 321 | WP_000086028.1 | hypothetical protein | - |
| PS033_RS02450 | 444419..445876 | + | 1458 | WP_059220010.1 | Trk system potassium transporter TrkG | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T272004 NZ_CP117678:442178-442280 [Escherichia albertii]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT272004 NZ_CP117678:c442282-442050 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
