Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1574648..1574880 | Replicon | chromosome |
| Accession | NZ_CP117606 | ||
| Organism | Escherichia albertii strain BIA_29 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1574650..1574752 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1574648..1574880 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PS031_RS07670 | 1571054..1572511 | - | 1458 | WP_024164813.1 | Trk system potassium transporter TrkG | - |
| PS031_RS07675 | 1572584..1572904 | - | 321 | WP_000086028.1 | hypothetical protein | - |
| - | 1574648..1574880 | + | 233 | - | - | Antitoxin |
| - | 1574650..1574752 | - | 103 | - | - | Toxin |
| PS031_RS07680 | 1574910..1575251 | - | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| PS031_RS07685 | 1575264..1576136 | - | 873 | WP_059244199.1 | copper homeostasis membrane protein CopD | - |
| PS031_RS07690 | 1576140..1576517 | - | 378 | WP_204629357.1 | CopC domain-containing protein YobA | - |
| PS031_RS07695 | 1576656..1576886 | + | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| PS031_RS07700 | 1577052..1577264 | + | 213 | Protein_1509 | carbon-nitrogen hydrolase family protein YobB | - |
| PS031_RS07705 | 1577288..1577950 | + | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | espJ | 1566334..1575251 | 8917 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T271650 NZ_CP117606:c1574752-1574650 [Escherichia albertii]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT271650 NZ_CP117606:1574648-1574880 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
