Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2075562..2075794 | Replicon | chromosome |
| Accession | NZ_CP117590 | ||
| Organism | Escherichia albertii strain BIA_36 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2075690..2075792 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2075562..2075794 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PS051_RS10200 | 2071426..2072088 | - | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
| PS051_RS10205 | 2072112..2072324 | - | 213 | Protein_1987 | carbon-nitrogen hydrolase family protein YobB | - |
| PS051_RS10210 | 2072490..2072720 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| PS051_RS10215 | 2072859..2073236 | + | 378 | WP_059278247.1 | CopC domain-containing protein YobA | - |
| PS051_RS10220 | 2073240..2074112 | + | 873 | WP_059220009.1 | copper homeostasis membrane protein CopD | - |
| PS051_RS10225 | 2074125..2074331 | + | 207 | Protein_1991 | DUF2511 domain-containing protein | - |
| PS051_RS10230 | 2074369..2075337 | + | 969 | WP_273780737.1 | IS5 family transposase | - |
| PS051_RS10235 | 2075395..2075532 | + | 138 | Protein_1993 | DUF2511 domain-containing protein | - |
| - | 2075562..2075794 | - | 233 | - | - | Antitoxin |
| - | 2075690..2075792 | + | 103 | - | - | Toxin |
| PS051_RS10240 | 2077516..2077665 | - | 150 | WP_002462310.1 | hypothetical protein | - |
| PS051_RS10245 | 2077931..2079387 | + | 1457 | Protein_1995 | Trk system potassium transporter TrkG | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 2074414..2075337 | 923 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T271567 NZ_CP117590:2075690-2075792 [Escherichia albertii]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT271567 NZ_CP117590:c2075794-2075562 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
