Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) hok-sok/-
Location 1028569..1028813 Replicon chromosome
Accession NZ_CP117590
Organism Escherichia albertii strain BIA_36

Toxin (Protein)


Gene name hokX Uniprot ID -
Locus tag PS051_RS04890 Protein ID WP_273781716.1
Coordinates 1028661..1028813 (+) Length 51 a.a.

Antitoxin (RNA)


Gene name sokX
Locus tag -
Coordinates 1028569..1028616 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PS051_RS04875 1024073..1025872 + 1800 WP_059269048.1 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit -
PS051_RS04880 1025872..1027584 + 1713 WP_273781715.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -
PS051_RS04885 1027663..1028397 + 735 WP_001125132.1 phosphoadenosine phosphosulfate reductase -
- 1028569..1028616 - 48 - - Antitoxin
PS051_RS04890 1028661..1028813 + 153 WP_273781716.1 Hok/Gef family protein Toxin
PS051_RS04895 1029006..1030118 - 1113 WP_095574181.1 IS4-like element IS421 family transposase -
PS051_RS04900 1030208..1031176 + 969 WP_273780737.1 IS5 family transposase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Hok/gef cell toxic protein

(5-46)


Sequences

Toxin        


Download         Length: 51 a.a.        Molecular weight: 5558.73 Da        Isoelectric Point: 6.0936

>T271566 WP_273781716.1 NZ_CP117590:1028661-1028813 [Escherichia albertii]
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFQAVLAYESKK

Download         Length: 153 bp

Antitoxin


Download         Length: 48 bp

>AT271566 NZ_CP117590:c1028616-1028569 [Escherichia albertii]
GTTCGAACGTAGGCCTCAGGTTGATAGAAATATCGCCTGGGGCTTTTG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Download structure file

References