Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-RelB
Location 4203425..4203941 Replicon chromosome
Accession NZ_CP117384
Organism Salmonella enterica subsp. enterica serovar Uganda strain RM013

Toxin (Protein)


Gene name relE Uniprot ID A0A3V5VNJ7
Locus tag PQP89_RS20580 Protein ID WP_000220577.1
Coordinates 4203425..4203709 (-) Length 95 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID V7ISI8
Locus tag PQP89_RS20585 Protein ID WP_000212724.1
Coordinates 4203699..4203941 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PQP89_RS20565 (4198541) 4198541..4200193 + 1653 WP_079798427.1 alpha,alpha-phosphotrehalase -
PQP89_RS20570 (4200602) 4200602..4202740 + 2139 WP_000187821.1 anaerobic ribonucleoside-triphosphate reductase -
PQP89_RS20575 (4202957) 4202957..4203421 + 465 WP_001009173.1 anaerobic ribonucleoside-triphosphate reductase-activating protein -
PQP89_RS20580 (4203425) 4203425..4203709 - 285 WP_000220577.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PQP89_RS20585 (4203699) 4203699..4203941 - 243 WP_000212724.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
PQP89_RS20590 (4204019) 4204019..4205932 - 1914 WP_001212131.1 BglG family transcription antiterminator -
PQP89_RS20595 (4205949) 4205949..4206689 - 741 WP_000779252.1 KDGP aldolase family protein -
PQP89_RS20600 (4206686) 4206686..4207804 - 1119 WP_001139178.1 DgaE family pyridoxal phosphate-dependent ammonia lyase -
PQP89_RS20605 (4207788) 4207788..4208921 - 1134 WP_000459930.1 amidohydrolase/deacetylase family metallohydrolase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-82)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-80)


Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 10912.71 Da        Isoelectric Point: 9.8739

>T271009 WP_000220577.1 NZ_CP117384:c4203709-4203425 [Salmonella enterica subsp. enterica serovar Uganda]
MTYELEFDPRALKEWHKLGDTVKAQLKKKLADVLLNPRIDSARLNDLPDCYKIKLKSSGYRLVYQVRDDVVIVFVVAVGK
REHSAVYHDANKRL

Download         Length: 285 bp

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 8961.34 Da        Isoelectric Point: 5.0651

>AT271009 WP_000212724.1 NZ_CP117384:c4203941-4203699 [Salmonella enterica subsp. enterica serovar Uganda]
MATLNVRLDDKLKNEAYAVLEKLNITPTEAVRLLFQYVAETGRMPVKTVTLSDSEDALIQTVRERLSSPQKGIKVSLDDL

Download         Length: 243 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A3V5VNJ7

Antitoxin

Source ID Structure
AlphaFold DB A0A5H5JRI5

References