Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2730342..2730487 | Replicon | chromosome |
| Accession | NZ_CP117373 | ||
| Organism | Salmonella enterica subsp. enterica serovar Dublin strain RM043 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2730344..2730447 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2730342..2730487 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ08_RS13535 | 2727222..2728052 | + | 831 | WP_024139186.1 | recombination protein RecT | - |
| PQQ08_RS13540 | 2728099..2728284 | + | 186 | WP_000280163.1 | DUF1187 family protein | - |
| PQQ08_RS13545 | 2728383..2728811 | + | 429 | WP_000743301.1 | hypothetical protein | - |
| PQQ08_RS13550 | 2728872..2729150 | + | 279 | WP_001675651.1 | excisionase | - |
| PQQ08_RS13555 | 2729125..2730204 | + | 1080 | WP_076031669.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2730342..2730487 | + | 146 | - | - | Antitoxin |
| - | 2730344..2730447 | - | 104 | - | - | Toxin |
| PQQ08_RS13560 | 2730587..2730940 | - | 354 | WP_000722368.1 | YebY family protein | - |
| PQQ08_RS13565 | 2730957..2731832 | - | 876 | WP_000979703.1 | copper homeostasis membrane protein CopD | - |
| PQQ08_RS13570 | 2731833..2732207 | - | 375 | WP_001751617.1 | CopC domain-containing protein YobA | - |
| PQQ08_RS13575 | 2732345..2732575 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PQQ08_RS13580 | 2732683..2733339 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| PQQ08_RS13585 | 2733363..2734061 | + | 699 | WP_000944287.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 / sopE2 / sodCI | 2662382..2736149 | 73767 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T270907 NZ_CP117373:c2730447-2730344 [Salmonella enterica subsp. enterica serovar Dublin]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT270907 NZ_CP117373:2730342-2730487 [Salmonella enterica subsp. enterica serovar Dublin]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
