Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2725328..2725473 | Replicon | chromosome |
| Accession | NZ_CP117354 | ||
| Organism | Salmonella enterica subsp. enterica serovar Dublin strain RM099 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2725330..2725433 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2725328..2725473 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQP84_RS13490 | 2722208..2723038 | + | 831 | WP_024139186.1 | recombination protein RecT | - |
| PQP84_RS13495 | 2723085..2723270 | + | 186 | WP_000280163.1 | DUF1187 family protein | - |
| PQP84_RS13500 | 2723369..2723797 | + | 429 | WP_000743301.1 | hypothetical protein | - |
| PQP84_RS13505 | 2723858..2724136 | + | 279 | WP_001675651.1 | excisionase | - |
| PQP84_RS13510 | 2724111..2725190 | + | 1080 | WP_000087638.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2725328..2725473 | + | 146 | - | - | Antitoxin |
| - | 2725330..2725433 | - | 104 | - | - | Toxin |
| PQP84_RS13515 | 2725573..2725926 | - | 354 | WP_000722368.1 | YebY family protein | - |
| PQP84_RS13520 | 2725943..2726818 | - | 876 | WP_000979703.1 | copper homeostasis membrane protein CopD | - |
| PQP84_RS13525 | 2726819..2727193 | - | 375 | WP_001751617.1 | CopC domain-containing protein YobA | - |
| PQP84_RS13530 | 2727331..2727561 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PQP84_RS13535 | 2727669..2728325 | + | 657 | WP_274891657.1 | carbon-nitrogen hydrolase family protein | - |
| PQP84_RS13540 | 2728349..2729047 | + | 699 | WP_000944287.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 / sopE2 / sodCI | 2657368..2747343 | 89975 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T270745 NZ_CP117354:c2725433-2725330 [Salmonella enterica subsp. enterica serovar Dublin]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT270745 NZ_CP117354:2725328-2725473 [Salmonella enterica subsp. enterica serovar Dublin]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
