Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2662691..2662834 | Replicon | chromosome |
| Accession | NZ_CP117317 | ||
| Organism | Salmonella enterica subsp. enterica serovar Derby strain RM002 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2662693..2662796 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2662691..2662834 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ14_RS12855 | 2658138..2658407 | + | 270 | WP_077248370.1 | hypothetical protein | - |
| PQQ14_RS12860 | 2658573..2658713 | + | 141 | WP_048348799.1 | hypothetical protein | - |
| PQQ14_RS12865 | 2658859..2659386 | - | 528 | Protein_2518 | transposase | - |
| PQQ14_RS12870 | 2659406..2659498 | - | 93 | WP_230855586.1 | hypothetical protein | - |
| PQQ14_RS12875 | 2659528..2661948 | - | 2421 | WP_048348800.1 | type III secretion system effector SspH3 | - |
| PQQ14_RS12880 | 2662121..2662204 | - | 84 | Protein_2521 | phage tail protein | - |
| PQQ14_RS12885 | 2662293..2662562 | + | 270 | WP_017441955.1 | tyrosine-type recombinase/integrase | - |
| - | 2662691..2662834 | + | 144 | - | - | Antitoxin |
| - | 2662693..2662796 | - | 104 | - | - | Toxin |
| PQQ14_RS12890 | 2662936..2663289 | - | 354 | WP_023232537.1 | YebY family protein | - |
| PQQ14_RS12895 | 2663306..2664181 | - | 876 | WP_072103686.1 | copper homeostasis membrane protein CopD | - |
| PQQ14_RS12900 | 2664182..2664556 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| PQQ14_RS12905 | 2664694..2664924 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PQQ14_RS12910 | 2665032..2665688 | + | 657 | WP_000100249.1 | carbon-nitrogen hydrolase family protein | - |
| PQQ14_RS12915 | 2665712..2666410 | + | 699 | WP_000944278.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T270473 NZ_CP117317:c2662796-2662693 [Salmonella enterica subsp. enterica serovar Derby]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT270473 NZ_CP117317:2662691-2662834 [Salmonella enterica subsp. enterica serovar Derby]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
