Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2778220..2778363 | Replicon | chromosome |
| Accession | NZ_CP117294 | ||
| Organism | Salmonella enterica subsp. enterica serovar Typhi strain S1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2778222..2778324 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2778220..2778363 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PRW94_RS13890 (PRW94_13890) | 2775498..2776628 | + | 1131 | WP_000529513.1 | GGDEF domain-containing protein | - |
| PRW94_RS13895 (PRW94_13895) | 2776914..2777309 | - | 396 | Protein_2723 | DUF977 family protein | - |
| PRW94_RS13900 (PRW94_13900) | 2777322..2777432 | - | 111 | Protein_2724 | replication protein | - |
| PRW94_RS13905 (PRW94_13905) | 2777433..2777794 | + | 362 | Protein_2725 | recombinase RecT | - |
| PRW94_RS13910 (PRW94_13910) | 2777793..2778101 | + | 309 | Protein_2726 | tyrosine-type recombinase/integrase | - |
| - | 2778220..2778363 | + | 144 | - | - | Antitoxin |
| - | 2778222..2778324 | - | 103 | - | - | Toxin |
| PRW94_RS13915 (PRW94_13915) | 2778465..2778818 | - | 354 | WP_000722366.1 | YebY family protein | - |
| PRW94_RS13920 (PRW94_13920) | 2778835..2779710 | - | 876 | WP_000979693.1 | copper homeostasis membrane protein CopD | - |
| PRW94_RS13925 (PRW94_13925) | 2779711..2780085 | - | 375 | WP_001681742.1 | CopC domain-containing protein YobA | - |
| PRW94_RS13930 (PRW94_13930) | 2780223..2780453 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PRW94_RS13935 (PRW94_13935) | 2780561..2781217 | + | 657 | WP_000100250.1 | carbon-nitrogen hydrolase family protein | - |
| PRW94_RS13940 (PRW94_13940) | 2781241..2781939 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 | 2754681..2784027 | 29346 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T270305 NZ_CP117294:c2778324-2778222 [Salmonella enterica subsp. enterica serovar Typhi]
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT270305 NZ_CP117294:2778220-2778363 [Salmonella enterica subsp. enterica serovar Typhi]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
