Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2776578..2776721 | Replicon | chromosome |
| Accession | NZ_CP117293 | ||
| Organism | Salmonella enterica subsp. enterica serovar Typhi strain S2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2776580..2776682 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2776578..2776721 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PRW95_RS13885 (PRW95_13885) | 2773856..2774986 | + | 1131 | WP_000529513.1 | GGDEF domain-containing protein | - |
| PRW95_RS13890 (PRW95_13890) | 2775272..2775667 | - | 396 | Protein_2722 | DUF977 family protein | - |
| PRW95_RS13895 (PRW95_13895) | 2775680..2775790 | - | 111 | Protein_2723 | replication protein | - |
| PRW95_RS13900 (PRW95_13900) | 2775791..2776152 | + | 362 | Protein_2724 | recombinase RecT | - |
| PRW95_RS13905 (PRW95_13905) | 2776151..2776459 | + | 309 | Protein_2725 | tyrosine-type recombinase/integrase | - |
| - | 2776578..2776721 | + | 144 | - | - | Antitoxin |
| - | 2776580..2776682 | - | 103 | - | - | Toxin |
| PRW95_RS13910 (PRW95_13910) | 2776823..2777176 | - | 354 | WP_000722366.1 | YebY family protein | - |
| PRW95_RS13915 (PRW95_13915) | 2777193..2778068 | - | 876 | WP_000979693.1 | copper homeostasis membrane protein CopD | - |
| PRW95_RS13920 (PRW95_13920) | 2778069..2778443 | - | 375 | WP_001681742.1 | CopC domain-containing protein YobA | - |
| PRW95_RS13925 (PRW95_13925) | 2778581..2778811 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PRW95_RS13930 (PRW95_13930) | 2778919..2779575 | + | 657 | WP_000100250.1 | carbon-nitrogen hydrolase family protein | - |
| PRW95_RS13935 (PRW95_13935) | 2779599..2780297 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 | 2745391..2798594 | 53203 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T270290 NZ_CP117293:c2776682-2776580 [Salmonella enterica subsp. enterica serovar Typhi]
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT270290 NZ_CP117293:2776578-2776721 [Salmonella enterica subsp. enterica serovar Typhi]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
