Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pasABC/RelE-HTH
Location 500555..501035 Replicon chromosome
Accession NZ_CP117267
Organism Rhizobium rhododendri strain rho-6.2

Toxin (Protein)


Gene name pasB Uniprot ID -
Locus tag PR018_RS02460 Protein ID WP_142824235.1
Coordinates 500763..501035 (+) Length 91 a.a.

Antitoxin (Protein)


Gene name pasA Uniprot ID -
Locus tag PR018_RS02455 Protein ID WP_142824234.1
Coordinates 500555..500779 (+) Length 75 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PR018_RS02420 (PR018_02420) 495774..496121 - 348 WP_142824228.1 DUF86 domain-containing protein -
PR018_RS02425 (PR018_02425) 496122..496418 - 297 WP_142824229.1 nucleotidyltransferase domain-containing protein -
PR018_RS02430 (PR018_02430) 496563..497696 + 1134 WP_142824230.1 site-specific DNA-methyltransferase -
PR018_RS02435 (PR018_02435) 497811..498176 - 366 WP_142824231.1 nuclear transport factor 2 family protein -
PR018_RS02440 (PR018_02440) 498181..498795 - 615 WP_142824232.1 HAD family phosphatase -
PR018_RS02445 (PR018_02445) 498812..499891 - 1080 WP_142829239.1 A/G-specific adenine glycosylase -
PR018_RS02450 (PR018_02450) 499992..500492 + 501 WP_142824233.1 DUF721 domain-containing protein -
PR018_RS02455 (PR018_02455) 500555..500779 + 225 WP_142824234.1 DUF6290 family protein Antitoxin
PR018_RS02460 (PR018_02460) 500763..501035 + 273 WP_142824235.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PR018_RS02465 (PR018_02465) 501247..501942 + 696 WP_142824236.1 DsbA family protein -
PR018_RS02470 (PR018_02470) 502339..505797 + 3459 WP_142824237.1 chromosome segregation SMC family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-88)

Antitoxin

Relaxosome protein TraY

(4-49)


Sequences

Toxin        


Download         Length: 91 a.a.        Molecular weight: 10728.29 Da        Isoelectric Point: 10.3301

>T270215 WP_142824235.1 NZ_CP117267:500763-501035 [Rhizobium rhododendri]
MAWRIEFQRSAERDLEKLDHESVKRILRFLHTRVASLEDPRSIGEALRGSELGNFWKYRVGDYRIIVDIDDGTVRILVVR
IGNRKDVYRR

Download         Length: 273 bp

Antitoxin


Download         Length: 75 a.a.        Molecular weight: 8556.63 Da        Isoelectric Point: 4.5468

>AT270215 WP_142824234.1 NZ_CP117267:500555-500779 [Rhizobium rhododendri]
MLALRLPPEIEARLDELAKRTGRSKSFYARQAILEHLDDLEDLYVAEQRLEEFRRGDSDSISLAELMARHGVED

Download         Length: 225 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References