Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2220268..2220536 | Replicon | chromosome |
| Accession | NZ_CP117235 | ||
| Organism | Escherichia coli strain ATCC 25922 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2220396..2220498 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2220268..2220536 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ28_RS10790 | 2216820..2217482 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| PQQ28_RS10795 | 2217506..2218162 | - | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PQQ28_RS10800 | 2218265..2218495 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PQQ28_RS10805 | 2218634..2219008 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| PQQ28_RS10810 | 2219012..2219884 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| PQQ28_RS10815 | 2219897..2220238 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2220268..2220536 | - | 269 | - | - | Antitoxin |
| - | 2220396..2220498 | + | 103 | - | - | Toxin |
| PQQ28_RS10820 | 2220633..2221289 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| PQQ28_RS10825 | 2221290..2221481 | - | 192 | WP_001317886.1 | YebW family protein | - |
| PQQ28_RS10830 | 2221586..2221822 | - | 237 | WP_001295499.1 | YebV family protein | - |
| PQQ28_RS10835 | 2221940..2223379 | - | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T270130 NZ_CP117235:2220396-2220498 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT270130 NZ_CP117235:c2220536-2220268 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
