Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2135965..2136236 | Replicon | chromosome |
| Accession | NZ_CP117053 | ||
| Organism | Escherichia coli strain MLI106K4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2136095..2136198 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2135965..2136236 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL407_RS11505 | 2132520..2133182 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NL407_RS11510 | 2133206..2133862 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NL407_RS11515 | 2133964..2134194 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NL407_RS11520 | 2134333..2134707 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NL407_RS11525 | 2134711..2135583 | + | 873 | WP_042346164.1 | copper homeostasis membrane protein CopD | - |
| NL407_RS11530 | 2135596..2135937 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2135965..2136236 | - | 272 | - | - | Antitoxin |
| - | 2136095..2136198 | + | 104 | - | - | Toxin |
| NL407_RS11535 | 2136333..2136989 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| NL407_RS11540 | 2136990..2137181 | - | 192 | WP_000457842.1 | YebW family protein | - |
| NL407_RS11545 | 2137286..2137522 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NL407_RS11550 | 2137640..2139079 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T269960 NZ_CP117053:2136095-2136198 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT269960 NZ_CP117053:c2136236-2135965 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
