Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2077417..2077549 | Replicon | chromosome |
| Accession | NC_017554 | ||
| Organism | Pantoea ananatis PA13 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2077452..2077549 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2077417..2077549 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PAGR_RS09790 | 2072600..2074672 | + | 2073 | WP_014605680.1 | prolyl oligopeptidase family serine peptidase | - |
| PAGR_RS09795 | 2074656..2075327 | - | 672 | WP_014593875.1 | exodeoxyribonuclease X | - |
| PAGR_RS09800 | 2075327..2075557 | - | 231 | WP_019105100.1 | DNA polymerase III subunit theta | - |
| PAGR_RS09805 | 2075708..2076082 | + | 375 | WP_014605681.1 | copper homeostasis periplasmic binding protein CopC | - |
| PAGR_RS09810 | 2076087..2076962 | + | 876 | WP_014605682.1 | copper homeostasis membrane protein CopD | - |
| PAGR_RS09815 | 2076990..2077337 | + | 348 | WP_014593872.1 | YebY family protein | - |
| - | 2077417..2077549 | - | 133 | - | - | Antitoxin |
| - | 2077452..2077549 | + | 98 | - | - | Toxin |
| PAGR_RS09820 | 2077690..2079234 | - | 1545 | WP_014605683.1 | MCP four helix bundle domain-containing protein | - |
| PAGR_RS09825 | 2079724..2080428 | - | 705 | WP_013026057.1 | GntR family transcriptional regulator | - |
| PAGR_RS09830 | 2080708..2082330 | + | 1623 | WP_014593869.1 | alpha-glucoside-specific PTS transporter subunit IIBC | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 98 bp
>T26995 NC_017554:2077452-2077549 [Pantoea ananatis PA13]
GCAAGGCGAAAGCCTCTATTAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTCCCTGGACCGAATACAGGAAT
CGTGTTCGGTCTTTTTTT
GCAAGGCGAAAGCCTCTATTAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTCCCTGGACCGAATACAGGAAT
CGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 133 bp
>AT26995 NC_017554:c2077549-2077417 [Pantoea ananatis PA13]
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTCAAGGAGCCGTGCGCTAAAAGTTGGCATTAA
TAGAGGCTTTCGCCTTGCTTCTAAAGCGTAGGACAACGCGCCAGATTTTCCAG
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTCAAGGAGCCGTGCGCTAAAAGTTGGCATTAA
TAGAGGCTTTCGCCTTGCTTCTAAAGCGTAGGACAACGCGCCAGATTTTCCAG
