Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2219804..2219949 | Replicon | chromosome |
| Accession | NZ_CP116903 | ||
| Organism | Klebsiella pneumoniae strain KP2722 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2219840..2219942 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2219804..2219949 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PO783_RS10945 (PO783_10945) | 2214934..2216994 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| PO783_RS10950 (PO783_10950) | 2216998..2217657 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| PO783_RS10955 (PO783_10955) | 2217736..2217966 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| PO783_RS10960 (PO783_10960) | 2218079..2218453 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| PO783_RS10965 (PO783_10965) | 2218457..2219326 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| PO783_RS10970 (PO783_10970) | 2219343..2219681 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2219804..2219949 | - | 146 | - | - | Antitoxin |
| - | 2219840..2219942 | + | 103 | - | - | Toxin |
| PO783_RS10975 (PO783_10975) | 2220317..2220460 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| PO783_RS10980 (PO783_10980) | 2220565..2221533 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| PO783_RS10985 (PO783_10985) | 2221690..2222343 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| PO783_RS10990 (PO783_10990) | 2222340..2222531 | - | 192 | WP_002911395.1 | YebW family protein | - |
| PO783_RS10995 (PO783_10995) | 2222629..2222868 | - | 240 | WP_002911393.1 | YebV family protein | - |
| PO783_RS11000 (PO783_11000) | 2222984..2224417 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T269341 NZ_CP116903:2219840-2219942 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT269341 NZ_CP116903:c2219949-2219804 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
